Cell Maps Pipeline

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The Cell Maps Pipeline takes ImmunoFluorescent images from the Human Protein Atlas along with Affinity Purification Mass Spectrometry data from one or more sources, converts them into embeddings that are then coembedded and converted into an integrated interaction network from which a hierarchical model is derived.

The pipeline invokes seven tools that each create an output directory where results are stored and registered within Research Object Crates (RO-Crate) using the FAIRSCAPE-cli.

Overview of Cell Maps Pipeline

Overview of Cell Maps Pipeline which shows PPI and image download followed by embedding, coembedding, and finally hierarchy generation


See links below for more information about the individual tools

Indices and tables