Cell Maps Pipeline

Contents:

  • Installation
  • Usage
    • Usage via command line
    • Usage programmatically
    • What is and how to create a provenance file
    • Example usage for CM4AI data
    • Example usage using data from Human Protein Atlas and Bioplex
    • Save hierarchy to NDEx
  • Outputs
  • Integration with Cytoscape Web
  • Reference
  • Developer Topics
  • Credits
  • History
Cell Maps Pipeline
  • Usage
  • View page source

Usage

This page provides information on how to use cellmaps_pipeline

Contents:

  • Usage via command line
  • Usage programmatically
  • What is and how to create a provenance file
  • Example usage for CM4AI data
    • CM4AI 0.5 Alpha Data Release
    • Example usage March 2025 Data Release (Beta)
  • Example usage using data from Human Protein Atlas and Bioplex
  • Save hierarchy to NDEx
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