Cell Maps Pipeline
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Contents:
Installation
Usage
Usage via command line
Usage programmatically
What is and how to create a provenance file
Example usage for CM4AI data
Example usage using data from Human Protein Atlas and Bioplex
Save hierarchy to NDEx
Outputs
Reference
Developer Topics
Credits
History
Cell Maps Pipeline
Usage
Edit on GitHub
Usage
This page provides information on how to use
cellmaps_pipeline
Contents:
Usage via command line
Usage programmatically
What is and how to create a provenance file
Example usage for CM4AI data
Step 1) Get data from CM4AI site
Step 2) Uncompress downloaded data from CM4AI site
Step 3) Run the cellmaps_pipeline on CM4AI data
Example usage using data from Human Protein Atlas and Bioplex
Save hierarchy to NDEx